Evaluation of freezing tolerance in chickpea promising genotypes (Cicer arietinum) using physiological traits and molecular markers

Authors

Department of Plant Production and Genetics, Faculty of Agricultural Sciences and Natural Resources, University of Mohaghegh Ardabili, Ardabil, Iran

Abstract
Chickpea is one of the most important plants of the legume family and is very important in the diet. In order to investigate the genetic diversity of chickpea, an experiment was conducted with 18 chickpea genotypes in the form of a completely to investigate the genetic diversity of chickpea, an experiment was conducted with 18 chickpea genotypes in the form of a completely randomized block design. After acclimatization of plants to cold, freezing treatment was applied at temperatures of -6, -8 and -10 and their 50% lethality temperature (LT50) was determined by probit transformation. Before and after the habituation stage, a leaf sample was taken and the relative content of leaf water, photosynthetic pigments, proline, soluble sugar, protein percentage, catalase, peroxidase, polyphenol oxidase and greenness index were measured. Genotype number 5 with the lowest LT50 (-8.86) and the highest survival percentage (80%) was the most resistant genotype and genotype 10 with the highest LT50 (-3.57) and the lowest survival percentage along with genotype 15 were recognized as the most sensitive genotypes. In order to evaluate genetic diversity, DNA extraction was utilized and 21 different ISSR primers were used in the investigation. The results showed the presence of polymorphism among the cultivars studied. A total of 101 clear bands were produced, of which 94 were polymorphic bands. Polymorphic information content (PIC) was in the range of 0.332 (initiator 7) to 0.049 (initiator 16). The amount of gene diversity was between 0.126 and 0.977 changes. Cluster analysis of genotypes was done using Jaccard similarity coefficient and UPGMA method

Keywords


Amiteye, S. 2021. Basic concepts and methodologies of DNA marker systems in plant molecular breeding. Heliyon E08093, 2021.
doi: 10.1016/j.heliyon.2021.e08093.
Baier, M., Bittner, A. Prescher, A., & van-Buer, J. 2019. Preparing plants for improved cold tolerance by priming. Plant Cell Environ 42: 782–800. doi:10.1111/pce.13394.
Barrero S.C., Silvestre S. Haslam R.P., & Michaelson, L.V. 2017. Lipid remodelling: unravelling the response to cold stress in Arabidopsis and its extremophile relative Eutrema salsugineum. Plant Science 263: 194-200.
Bink, M.C.A.M., Totir, L.R. ter Braak, C.J.F. Winkler, C.R. Boer, M.P. & Smith, O.S. 2012. QTL linkage analysis of connected populations using ancestral marker and pedigree information. Theoretical and Applied Genetics 124: 1097-1113. doi.org/10.1007/s00122-011-1772-8.
Bates, L., Waldren, R. & Teare, I. 1973. Rapid determination of free proline for water-stress studies. Plant and Soil 39: 205-207.
Bergjord-Olsen, A.K., Persson, T. de Wit, A. Nkurunziza, L. Sindhøj, E. & Eckersten, H. 2018. Estimating winter survival of winter wheat by simulations of plant frost tolerance. Journal of Agronomy and Crop Science 204: 62-73. doi.org/10.1111/jac.12238.
Bradford, MM., 1976. A Rapid and Sensitive Method for the Quantitation of Microgram Quantities of Protein Utilizing the Principle of Dye Binding. Analytical Biochemistry 72: 248–254.
Chance, B., and Maehly, A.C. 1955. Assay of catalases and peroxidases. Methods in Enzymology 11: 764-755.
Cardona, C.A., Duncan, R.R. & Lindstorm, O. 1997. Low temperature tolerance assessment in paspalum. Crop Sciences 37: 1283-1291.
Chandora, R., Gayacharan, Shekhawat, N. & Malhotra, N. 2020. Chapter 3 - Chickpea genetic resources: collection, conservation, characterization, and maintenance. Chickpea: Crop Wild Relatives for Enhancing Genetic Gains 2020: 37-61. doi.org/10.1016/B978-0-12-818299-4.00003-8.
Chung, J., Babka, H.L. Graef, G.L. Staswick, P.E. Lee, D.J. Cregan, P.B. Shoemaker R.C. & Specht, J.E. 2003. The seed protein, oil, and yield QTL on soybean linkage group I. Crop Science 43: 1053-1067.
Ding, Y., Shi, Y. & Yang, S. 2019. Advances and challenges in uncovering cold tolerance regulatory mechanisms in plants. Plant Epigenetics 222: 1690-1704. doi.org/10.1111/nph.15696.
Dunne, J.C., Tuong, T.D. Livingston, D.P. Reynolds, W.C. & Milla-Lewis. S.R. 2019. Field and Laboratory Evaluation of Bermudagrass Germplasm for Cold Hardiness and Freezing Tolerance. Crop Science 59: 392-399.
doi.org/10.2135/cropsci2017.11.0667.
Flores-Tinoco, C.E., Tschan, F. Fuhrer, Margot, C.T. Sauer, U. Christen, M. & Christen, B. 2020. Co-catabolism of arginine and succinate drives symbiotic nitrogen fixation. Molecular Systems Biology e9419. doi: 10.15252/msb.20199419
Ghangal, R., Rajkumar, M.S., Garg, R. & Jain, M. 2020. Genome-wide analysis of glutathione S-transferase gene family in chickpea suggests its role during seed development and abiotic stress. Molecular Systems Biology 47: 2749–2761. doi.org/10.1007/s11033-020-05377-8.
Grasso, N., Lynch, N.L. Arendt, E.K. & O'Mahony, J.A. 2022. Chickpea protein ingredients: A review of composition, functionality, and applications. Comprehensive Reviews in Food Science and Food Safety 21:435-452. doi:10.1111/1541-4337.12878.
Grover, A., and Sharma, P. C. 2013. Development and use of molecular markers: past and present. Critical Reviews in Biotechnology 36: 290-302. doi.org/10.3109/07388551.2014.959891.
Gusta, L.V., Fowler D.B. & Tyler, N.J. 1982. Factors influencing hardening and survival in winter wheat. n: P.H. Li and A. Sakai (Eds), Plant Cold Hardiness and Freezing and survival in winter wheat. In: P.H. Li and A. Sakai (Eds), Plant Cold Hardiness and Freezing Stress, Mechanisms and Cropa Implications. Academic Pressing 25: 23-40.
Homer, A., ŞAHİN, M. & Küçüközdemir, U. 2016. Evaluation of pea (Pisum sativum L.) germplasm for winter hardiness in Central Anatolia, Turkey, using field and controlled environment. Czech Journal of Genetics and Plant Breeding 52:55-63. DOI: 10.17221/186/2015-CJGPB
Irigoyen, J.J., Emerich, D.W. & Sanchez-Diaz, M. 1992. Water stress induced changes in concentrations of proline and total soluble sugars in alfalfa (Medicago sativa L.). Plants and Plant Physiology 84: 55-60. doi.org/10.1111/j.1399-3054.1992.tb08764.x
Jangir, H., Bhardwaj, A. & Das, M. 2020. Larger root nodules increased Fe, Mo, Mg, P, Ca, Mn, K in the roots and higher yield in chickpea grown from nano FeS 2 pre-treated seeds: emulating nitrogenase. Applied Nanoscience 10: 445–454. doi: 10.1007/s13204-019-01238-4
Jha, U.C., Nayyar, H. Parida, S.K. Deshmukh, R. von-Wettberg, E.J.B. & Siddique, K.H.M. 2022. Ensuring Global Food Security by Improving Protein Content in Major Grain Legumes Using Breeding and ‘Omics’ Tools. International Journal of Molecular Sciences 23: 7710. doi.org/10.3390/ijms23147710
Jukanti, A. K., Gaur, P.M. Gowda, C.L.L. & Chibbar, R.N. 2012. Nutritional quality and health benefits of chickpea (Cicer arietinum L.). A review, British Journal of Nutrition 108: 11–26. doi.org/10.1017/S0007114512000797.
Kar, M., and Mishra, D. 1976. Catalase, peroxidase, and polyphenoloxidase activities during rice leaf senescence. Plant Physiology 57: 315-319. doi: 10.1104/pp.57.2.315.
Kaur, R., and Prasad, K. 2021. Technological, processing and nutritional aspects of chickpea (Cicer arietinum) - A review. Trends in Food Science & Technology 109: 448-463.
doi.org/10.1016/j.tifs.2021.01.044
Keykha Akhar, F., Bagheri, A. Moshtaghi, N. & Nezami, A. 2012. Selection for Freezing Tolerance in Chickpea (Cicer arietinum L.) by in vitro Culture. Iranian Journal of Field Crops Research 10: 292-298. doi.org/10.22067/GSC.V10I2.16162. (In Persion.)
Lichtenthaler, H.K., 1987. Chlorophylls and carotenoids: pigments of photosynthetic biomembranes. In Methods in enzymology Elsevier 148: 350-382.
doi.org/10.1016/0076-6879(87)48036-1.
Nazari, MR., Maali Amiri, R. & Ramezanpour, SS. 2011. Quantitative assessment of gene expression pattern of beta galactosidase and beta glucosidase under cold stress condition in chickpea. Modern Genetics Journal 4: 59-70. (In Persion.)
Nei, M., 1972. Genetic distance between populations. The American Naturalist 106: 283-292. doi.org/10.1086/282771
Nezami, A., Bagheri, A. Rahimian, H. Kafi, M. & Nassiri-Mahallati, M. 2007. Evaluation of Feezing Tolerance of Chickpea (Cicer arietinum L.) Genotypes under Controlled Conditions. Journal Of Science And Technology Of Agriculture And Natural Resources 10: 257-269.
dorl.net/dor/20.1001.1.24763594.1385.10.4.19.0. (In Persion).
Paudel, D., Dhakal, S. Parajuli, S. Adhikari, L. Peng, Z. Qian, Y. Shahi, D. Avci, M. Makaju, S.O. & Kannan, B. 2020. Use of quantitative trait loci to develop stress tolerance in plants. Plant Life Under Changing Environment. Responses and Management, 2020: 917-965. doi.org/10.1016/B978-0-12-818204-8.00048-5.
Prasad, M., Varshney, R. Roy, J. Balyan, H. & Gupta, P. 2000. The use of microsatellites for detecting DNA polymorphism, genotype identification and genetic diversity in wheat. Theoretical and Applied Genetics 100: 584-592. doi.org/10.1007/s001220050077.
Powell, W., Morgante, M. Andre, C. Hanafey, M. Vogel, J. Tingey S. & Rafalski, A. 1996. The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germplasm analysis. Molecular Breeding 2: 225-238. doi.org/10.1007/BF00564200.
Rachwa-Rosiak, D., Nebesny, E. & Budryn, G. 2015. Chickpeas - Composition, Nutritional Value, Health Benefits, Application to Bread and Snacks: A Review. Critical Reviews in Food Science and Nutrition 55: 1137–1145. doi.org/10.1080/10408398.2012. 687418.
Rapacz, M., Sasal, M. & Wójcik-Jagła, M. 2015. Direct and indirect measurements of freezing tolerance: advantages and limitations. Acta Physiologiae Plantarum 37: 157.
Doi.org/10.1007/s11738-015-1907-7.
Ritchie, S.W., Nguyen H.T. & Holaday, A.S. 1990. Leaf water content and gas-exchange parameters of two wheat genotypes differing in drought resistance. Crop Science 30: 105-111. doi.org/10.2135/cropsci1990.0011183X003000010025x.
Roorkiwal, M., Jain, A. Thudi, M. & Varshney, R.K. 2017. Advances in Chickpea Genomic Resources for Accelerating the Crop Improvement. The Chickpea Genome. Springer, Cham 53-67. DOI:10.1007/978-3-319-66117-9_6.
Saghai-Maroof, MA., Soliman, KM. Jorgensen, RA. & Allard, R. 1984. Ribosomal DNA spacer-length polymorphisms in barley: Mendelian inheritance, chromosomal location, and population dynamics. Proceedings of the National Academy of Sciences 81: 8014-8018. DOI: 10.1073/pnas.81.24.8014.
Sanghera, G.S., Wani, S.H. Hussain, W. & Singh, N.B. 2011. Engineering Cold Stress Tolerance in Crop Plants. Curr Genomics 12: 30–43. doi:10.2174/138920211794520178.
Serrote, C.M.L., Reiniger, L.R.S. Silva, K.B. Rabaiolli, S.M.D.S. & Stefanel, C.M. 2020. Determining the Polymorphism Information Content of a molecular marker. Gene 726: 144-175. doi.org/10.1016/j.gene.2019.144175.
Shannon, C. 1948. A Mathematical Theory of Communication, Bell System Technical Journal 27: 379-423 and 623-656. doi.org/10.1002/j.1538-7305.1948.tb01338.x.
Shi, A., Kantartzi, S., Mmbaga, M. & Chen, P. 2010. Development of ISSR PCR markers for diversity study in dogwood (Cornus spp.) . Agriculture and Biology Journal of North America 1: 189 194. DOI: 10.5251/abjna.2010.1.3.189.194.
Singh, V. Chauhan, Y. Dalal, R. Schmidt, S. 2021. Chickpea. The Beans and the Peas. From Orphan to Mainstream Crops 2021: 173-215. doi.org/10.1016/B978-0-12-821450-3.00003-2.
Singh, R., Sharma, P. Varshney, R.K. Sharma S. & Singh, N.K. 2008. Chickpea improvement: role of wild species and genetic markers. Biotechnology and Genetic Engineering Reviews 25: 267-313. doi: 10.5661/bger-25-267.
Skinner, D. and Garland-Campbell, K.A. 2008. The relationship of LT50 to prolonged freezing survival in winter wheat. Canadian Journal of Plant Science 2008: 88. doi.org/10.4141/CJPS08007.
Soriano, J.M. 2020. Molecular Marker Technology for Crop Improvement. Agronomy 10: 1462. doi.org/10.3390/agronomy10101462.
Thudi, M., Manthena, R. Wani, S.P. Tatikonda, L. Hoisington D.A. & Varshney, R.K. 2010. Analysis of genetic diversity in pongamia (Pongamia pinnata L.) using AFLP Markers. Journal of plant Biochemistry and Biotechnology 19: 209-216. doi.org/10.1007/BF03263342.
Velasco-Ramírez, A.P., Torres-Morán, M.I. Molina-Moret, S. Jesús Sánchez-González, J.D.J. & Santacruz-Ruvalcaba, F. 2014. Efficiency of RAPD, ISSR, AFLP and ISTR markers for the detection of polymorphisms and genetic relationships in camote de cerro (Dioscorea spp.). Electronic Journal of Biotechnology 17: 65-71.
doi.org/10.1016/j.ejbt.2014.01.002.
Zangeneh, M. and Salehi, H. 2019. Sequence Repeat Polymorphism in Narcissus Accessions to Identify the Tolerant Genotypes for Deficit Irrigation. American Society for Horticultural Science 144: 92–106. doi.org/10.21273/JASHS04583-18.
Zeitelhofer, M., Zhou, R. & Ottosen, C.O. 2022. Physiological Responses of Chickpea Genotypes to Cold and Heat Stress in Flowering Stage. Agronomy 12; 2755. doi.org/10.3390/agronomy12112755

  • Receive Date 08 June 2026
  • Publish Date 08 June 2026